Enzyme Speeds How Ocean Locks Away Carbon

OceanScientists have found that a common enzyme can speed up—by 500 times—the rate-limiting part of the chemical reaction that helps the Earth lock away, or sequester, carbon dioxide in the ocean.

“While the new paper is about a basic chemical mechanism, the implication is that we might better mimic the natural process that stores carbon dioxide in the ocean,” says lead author Adam Subhas, a California Institute of Technology (Caltech) graduate student.

Simple problem, complex answer

The researchers used isotopic labeling and two methods for measuring isotope ratios in solutions and solids to study calcite—a form of calcium carbonate—dissolving in seawater and measure how fast it occurs at a molecular level.

It all started with a very simple, very basic problem: measuring how long it takes for calcite to dissolve in seawater.

“Although a seemingly straightforward problem, the kinetics of the reaction is poorly understood,” says Berelson, professor of earth sciences at the University of Southern California Dornsife College of Letters, Arts, and Sciences.

Calcite is a mineral made of calcium, carbon, and oxygen that is more commonly known as the sedimentary precursor to limestone and marble. In the ocean, calcite is a sediment formed from the shells of organisms, like plankton, that have died and sunk to the seafloor. Calcium carbonate is also the material that makes up coral reefs—the exoskeleton of the coral polyp.

As atmospheric carbon dioxide levels have risen past 400 parts per million—a symbolic benchmark for climate scientists confirming that the effects of the greenhouse gas in the atmosphere will be felt for generations to come—the surface oceans have absorbed more and more of that carbon dioxide.

This is part of a natural buffering process—the oceans act as a major reservoir of carbon dioxide. At the present time, they hold roughly 50 times as much of the greenhouse gas as the atmosphere.

However, there is a second, slower, buffering process that removes carbon dioxide from the atmosphere.

Carbon dioxide is an acid in seawater, just as it is in carbonated sodas (which is part of why they eat away at your tooth enamel). The acidified surface ocean waters will eventually circulate to the deep where they can react with the dead calcium carbonate shells on the sea floor and neutralize the added carbon dioxide.

This process will take tens of thousands of years to complete, however, and meanwhile, the ever-more acidic surface waters eat away at coral reefs. But how quickly will the coral dissolve?

“We decided to tackle this problem because it’s kind of embarrassing, the state of knowledge expressed in the literature,” says Adkins, a professor of geochemistry and global environmental science at Caltech. “We can’t tell you how quickly the coral is going to dissolve.”

‘One of those rare moments’

Earlier methods relied on measuring the change in pH in the seawater as calcium carbonate dissolved, and inferring dissolution rates from that. (As calcium carbonate dissolves, it raises the pH of water, making it less acidic.) Subhas and Adkins instead opted to use isotopic labeling.

Carbon atoms exist in two stable forms in nature. About 98.9 percent of it is carbon-12, which has six protons and six neutrons. About 1.1 percent is carbon-13, with one extra neutron.

Subhas and Adkins engineered a sample of calcite made entirely of the rare carbon-13, and then dissolved it in seawater. By measuring the change in the ratio of carbon-12 to carbon-13 in the seawater over time, they were able to quantify the dissolution at a molecular level. Their method proved to be about 200 times more sensitive than comparable techniques for studying the process.

On paper, the reaction is fairly straightforward: Water plus carbon dioxide plus calcium carbonate equals dissolved calcium and bicarbonate ions in water. In practice, it is complex.

“Somehow, calcium carbonate decides to spontaneously slice itself in half. But what is the actual chemical path that reaction takes?” Adkins says.

Studying the process with a secondary ion mass spectrometer (which analyzes the surface of a solid by bombarding it with a beam of ions) and a cavity ringdown spectrometer (which analyzes the 13C/12C ratio in solution), Subhas discovered that the slow part of the reaction is the conversion of carbon dioxide and water to carbonic acid.

“This reaction has been overlooked,” Subhas says. “The slow step is making and breaking carbon-oxygen bonds. They don’t like to break; they’re stable forms.”

Armed with this knowledge, the team added the enzyme carbonic anhydrase—which helps maintain the pH balance of blood in humans and other animals—and were able to speed up the reaction by orders of magnitude.

“This is one of those rare moments in the arc of one’s career where you just go, ‘I just discovered something no one ever knew,’” Adkins says.

A paper about the work appears online in the Proceedings of the National Academy of Sciences.

Additional coauthors are from Caltech; the USC; and the Hebrew University of Jerusalem. The National Science Foundation, the Resnick Sustainability Institute at Caltech, the Rothenberg Innovation Initiative (RI2), and the Linde Center for Global Environmental Science supported this research.

This article originally appeared on Futurity.

Source: Caltech

Original Study DOI: 10.1073/pnas.1703604114

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